bio-workflows-metabolomics-pipeline

Name: bio-workflows-metabolomics-pipeline
Rating: 5 (1 reviews)
Author: bg-szy

End-to-end metabolomics workflow from raw MS data to pathway analysis. Orchestrates XCMS preprocessing, annotation, normalization, statistical analysis, and pathway mapping. Use when processing LC-MS metabolomics data.

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Atualizado há 15 dias

Ver no GitHub ↗

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Version Compatibility

Reference examples tested with: MSnbase 2.28+, ggplot2 3.5+, limma 3.58+, scanpy 1.10+, xcms 4.0+

Before using code patterns, verify installed versions match. If versions differ:

R: packageVersion('<pkg>') then ?function_name to verify parameters

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

Metabolomics Pipeline

**"Process my LC-MS metabolomics d

[Description truncada. Veja o README completo no GitHub.]

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