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End-to-end 16S amplicon workflow from FASTQ reads to differential abundance. Orchestrates DADA2 ASV inference, taxonomy assignment, diversity analysis, and compositional testing with ALDEx2. Use when processing 16S/ITS amplicon data.
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COPYRIGHT NOTICE
This file is part of the "Universal Biomedical Skills" project.
Copyright (c) 2026 MD BABU MIA, PhD <md.babu.mia@mssm.edu>
All Rights Reserved.
#
This code is proprietary and confidential.
Unauthorized copying of this file, via any medium is strictly prohibited.
#
Provenance: Authenticated by MD BABU MIA
-->
Microbiome Pipeline
Pipeline Overview
Paired-End FASTQ (16S V4)
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[Description truncada. Veja o README completo no GitHub.]
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