bio-workflows-microbiome-pipeline

Name: bio-workflows-microbiome-pipeline
Author: bg-szy

Automação

Autor: bg-szy

End-to-end 16S amplicon workflow from FASTQ reads to differential abundance. Orchestrates DADA2 ASV inference, taxonomy assignment, diversity analysis, and compositional testing with ALDEx2. Use when processing 16S/ITS amplicon data.

2estrelas

Atualizado há 4 meses

Ver no GitHub ↗

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Version Compatibility

Reference examples tested with: DADA2 1.30+, ggplot2 3.5+, phyloseq 1.46+, scanpy 1.10+, vegan 2.6+

Before using code patterns, verify installed versions match. If versions differ:

R: packageVersion('<pkg>') then ?function_name to verify parameters

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

Microbiome Pipeline

**"Run end-to-end 16S microbiome a

[Description truncada. Veja o README completo no GitHub.]

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