bio-workflows-proteomics-pipeline

Name: bio-workflows-proteomics-pipeline
Rating: 5 (1 reviews)
Author: bg-szy

End-to-end proteomics workflow from MaxQuant output to differential protein abundance. Orchestrates data import, normalization, imputation, and statistical testing with limma (default) or MSstats for complex feature-level designs. Use when processing mass spectrometry proteomics.

1stars

Updated 15 days ago

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Version Compatibility

Reference examples tested with: MSnbase 2.28+, ggplot2 3.5+, limma 3.58+, DEqMS 1.20+, ashr 2.2+

Before using code patterns, verify installed versions match. If versions differ:

R: packageVersion('<pkg>') then ?function_name to verify parameters

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

Proteomics Pipeline

**"Process my proteomics data from ra

[Description truncada. Veja o README completo no GitHub.]

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