deepTools — NGS Data Analysis Toolkit
Overview
deepTools is a command-line toolkit for processing and visualizing high-throughput sequencing data. It converts BAM alignments to normalized coverage tracks (bigWig), performs quality control (correlation, PCA, fingerprint), and generates publication-quality heatmaps and profile plots around genomic features. Supports ChIP-seq, RNA-seq, ATAC-seq, and MNase-seq.
When to Use
- Converting BAM files to normalized bigWig coverage tracks
- Com
[Description truncada. Veja o README completo no GitHub.]