"Structure similarity search with Foldseek. Use this skill when: (1) Finding similar structures in PDB/AFDB databases, (2) Structural homology search, (3) Database queries by 3D structure, (4) Finding remote homologs not detected by sequence, (5) Clustering structures by similarity.
Note: Foldseek can run locally or via web server. No GPU required.
Option 1: Web Server (Quick; rate-limited, use sparingly)
# Upload structure to web server
curl -X POST "https://search.foldseek.com/api/ticket" \
-F "q=@query.pdb" \
-F "databas
[Description truncada. Veja o README completo no GitHub.]