GA4GH Standards Validator Skill
Purpose
Provide GA4GH standards compliance for data sharing and interoperability.
Capabilities
- VCF/BAM format validation
- htsget API compliance
- Beacon protocol testing
- DRS/WES/TES compliance
- Data model validation
- Interoperability testing
Usage Guidelines
- Validate file formats against specifications
- Test API compliance for data sharing
- Implement Beacon for variant queries
- Ensure workflow execution standards compliance
- Validate data models for exchange
- Document compliance status
Dependencies
- GA4GH toolkits
- htslib
- Beacon v2
Process Integration
- Genomic Data Governance (genomic-data-governance)
- Reproducible Research Workflow (reproducible-research)