immunogenomics
V(D)J repertoire analysis, HLA typing, and neoantigen prediction pipelines.
Quick Reference
| Task | Tool | Output | |------|------|--------| | scTCR/BCR analysis | scirpy | Clonotype tables, diversity plots | | Bulk TCR/BCR from RNA-seq | TRUST4 | CDR3 sequences, V/J assignments | | HLA typing | OptiType | 4-digit HLA alleles | | Peptide-MHC binding | NetMHCpan | Rank percentile, binding affinity | | Neoantigen pipeline | pVACseq | Prioritized epitope list |
scirpy: 1
[Description truncada. Veja o README completo no GitHub.]