muon — Multi-Modal Single-Cell Analysis
Overview
muon is a Python framework for multi-modal single-cell data analysis that extends the AnnData ecosystem. Its core data structure, MuData, holds multiple AnnData objects (one per modality: RNA, ATAC, protein, etc.) with shared observation and variable axes, enabling coordinated operations across all modalities. muon provides modality-specific preprocessing routines (TF-IDF and LSI for ATAC, CLR normalization for surface proteins), Weight
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