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scikit-bio
Overview
scikit-bio is a comprehensive Python library for biological data analysis, spanning sequence manipulation, alignment, phylogenetics, microbial ecology, and multivariate statistics. It provides specialized data structures (DNA, RNA, Protein, DistanceMatrix, TreeNode, TabularMSA) that integrate with the broader Python scientific stack.
When to Use
Calculating alpha/beta diversity and running PERMANOVA on microbiome data
Building phylogenetic trees from distance
[Description truncada. Veja o README completo no GitHub.]