single-cell-clustering-and-batch-correction-with-omicverse

Name: single-cell-clustering-and-batch-correction-with-omicverse
Author: bg-szy

Automação

Autor: bg-szy

Guide Claude through omicverse's single-cell clustering workflow, covering preprocessing, QC, multimethod clustering, topic modeling, cNMF, and cross-batch integration as demonstrated in t_cluster.ipynb and t_single_batch.ipynb.

2estrelas

Atualizado há 4 meses

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Ler descrição completa

Single-cell clustering and batch correction with omicverse

Overview

This skill distills the single-cell tutorials [t_cluster.ipynb](../../omicverse_guide/docs/Tutorials-single/t_cluster.ipynb) and [t_single_batch.ipynb](../../omicverse_guide/docs/Tutorials-single/t_single_batch.ipynb). Use it when a user wants to preprocess an AnnData object, explore clustering alternatives (Leiden, Louvain, scICE, GMM, topic/cNMF models), and evaluate or harmonise batches with omicverse utilities.

[Description truncada. Veja o README completo no GitHub.]

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