Singularity Container Manager Skill
Purpose
Provide Singularity container management for HPC-compatible containerized execution.
Capabilities
- Container building from recipes
- Registry pull and caching
- Bind mount configuration
- GPU passthrough
- MPI integration
- Security compliance for HPC
Usage Guidelines
- Build containers from definition files
- Cache containers for repeated use
- Configure bind mounts appropriately
- Enable GPU for accelerated workloads
- Integrate with MPI for parallel computing
- Ensure HPC security compliance
Dependencies
- Singularity/Apptainer
- Docker
- BioContainers
Process Integration
- Reproducible Research Workflow (reproducible-research)
- All analysis pipelines