SRAgent: Sequence Read Archive Data and Publication Retrieval
Overview
SRAgent is an agentic workflow system for working with the NCBI Sequence Read Archive (SRA) and Gene Expression Omnibus (GEO) databases. It automates literature discovery, metadata extraction, and manuscript retrieval for genomics datasets.
Setup Instructions
1. Install SRAgent
SRAgent requires Python ≥3.11. Check to see if SRAgent is already installed:
which SRAgent
If SRAgent is not installed,
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