STRING Network Analyzer Skill
Purpose
Provide STRING protein interaction network analysis for functional enrichment and network visualization.
Capabilities
- Protein-protein interaction queries
- Network clustering
- Functional enrichment analysis
- Cytoscape integration
- Network visualization
- Interaction confidence scoring
Usage Guidelines
- Query interactions with appropriate confidence thresholds
- Cluster networks to identify modules
- Perform functional enrichment on modules
- Visualize networks with meaningful layouts
- Export to Cytoscape for advanced visualization
- Document confidence thresholds and filters
Dependencies
- STRING-db
- Cytoscape
- NetworkX
Process Integration
- Mass Spectrometry Proteomics Pipeline (ms-proteomics-pipeline)
- Multi-Omics Data Integration (multi-omics-integration)