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tooluniverse-spatial-transcriptomics

Analyze spatial transcriptomics data to map gene expression in tissue architecture. Supports 10x Visium, MERFISH, seqFISH, Slide-seq, and imaging-based platforms. Performs spatial clustering, domain identification, cell-cell proximity analysis, spatial gene expression patterns, tissue architecture mapping, and integration with single-cell data. Use when analyzing spatial transcriptomics datasets,

2estrelas
Atualizado há 4 meses

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Ler descrição completa

Spatial Transcriptomics Analysis

Comprehensive analysis of spatially-resolved transcriptomics data to understand gene expression patterns in tissue architecture context. Combines expression profiling with spatial coordinates to reveal tissue organization, cell-cell interactions, and spatially variable genes.

When to Use This Skill

Triggers:

  • User has spatial transcriptomics data (Visium, MERFISH, seqFISH, etc.)
  • Questions about tissue architecture or spatial organization
  • Spatial

[Description truncada. Veja o README completo no GitHub.]

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