Pesquisa e Web

Research project management for medical manuscripts. Scaffold project structure, track writing progress across phases, maintain project memory files, generate submission checklists and backwards timelines. Commands: init, status, sync-memory, checklist, timeline.

Check manuscript compliance with medical research reporting guidelines. Supports 33 guidelines including STROBE, CONSORT, STARD, STARD-AI, TRIPOD, TRIPOD+AI, ARRIVE, PRISMA, PRISMA-DTA, PRISMA-P, CARE, SPIRIT, CLAIM, MI-CLEAR-LLM, SQUIRE 2.0, CLEAR, MOOSE, GRRAS, SWiM, AMSTAR 2, and risk of bias tools (QUADAS-2, QUADAS-C, RoB 2, ROBINS-I, ROBINS-E, ROBIS, ROB-ME, PROBAST, PROBAST+AI, NOS, COSMIN,

Cross-cutting reference manager for medical manuscripts. Single entry point for citation-key validation, journal-CSL pandoc rendering, manuscript ↔ DOCX cross-reference QC, marker conversion (``[N]`` ↔ ``[@key]``), and native Zotero CWYW field-code injection. Replaces the inline reference-handling that previously lived in ``/write-paper`` Phase 7.6 and is reused by ``/revise``, ``/peer-review``, `

Convert a personal agent skill into a distributable, open-source-ready skill. Runs PII audit, generalization, license compatibility check, cross-platform adapter review, and packaging workflow.

Audit SSOT-to-submission drift and create journal submission manifests from canonical manuscript artifacts.

Detect and remove AI writing patterns from academic manuscripts and response-to-reviewers letters. Scans for 24 common AI-generated text patterns and rewrites flagged passages to sound naturally human-written while preserving technical accuracy.

Generate publication-ready figures and visual abstracts for medical research papers. Supports ROC curves, forest plots, CONSORT/STARD/PRISMA flow diagrams, calibration plots, Kaplan-Meier curves, Bland-Altman plots, confusion matrices, pipeline diagrams, and journal-specific visual/graphical abstracts (python-pptx template-based).

Intake and normalize a new radiology research project. Classifies project type, summarizes current state, identifies missing inputs, recommends next steps, and scaffolds lightweight project memory files.

Audit-only verification of manuscript references against PubMed and CrossRef. Detects fabricated or mismatched citations and writes qc/reference_audit.json. Does not modify references/ or refs.bib.

Literature search and citation management for medical research. Searches PubMed, Semantic Scholar, and bioRxiv/medRxiv with verified citations. Anti-hallucination — every reference verified via API before inclusion. Generates BibTeX entries.

De-identify clinical research data before LLM-assisted analysis. Standalone Python CLI detects PHI via regex + heuristics with 10 country locale packs (kr, us, jp, cn, de, uk, fr, ca, au, in). Interactive terminal review. No LLM touches raw data — the script runs locally without any network or AI calls.

Literature-grounded variable operationalization for observational research. Turns a data dictionary + research question into a citation-backed table of exposure/outcome/covariate definitions, cutoffs, and DB variable mappings. Prevents ad-hoc phenotype definitions that invite reviewer rejection. Bridges /search-lit output into /write-protocol Methods.