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verification-loop

1

A comprehensive verification system for Claude Code sessions.

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tooluniverse-variant-analysis

1

Production-ready VCF processing, variant annotation, mutation analysis, and structural variant (SV/CNV) interpretation for bioinformatics questions. Parses VCF files (streaming, large files), classifies mutation types (missense, nonsense, synonymous, frameshift, splice, intronic, intergenic) and structural variants (deletions, duplications, inversions, translocations), applies VAF/depth/quality/co

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torch-geometric

1

Graph Neural Networks (PyG). Node/graph classification, link prediction, GCN, GAT, GraphSAGE, heterogeneous graphs, molecular property prediction, for geometric deep learning.

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transformers

1

Hugging Face Transformers for loading Hub models, running pipeline inference, text generation, and Trainer fine-tuning on NLP, vision, audio, and multimodal tasks. Use when working with AutoModel, pipelines, tokenizers, or TrainingArguments—not for general ML outside the Transformers library.

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tooluniverse-target-research

1

Gather comprehensive biological target intelligence from 9 parallel research paths covering protein info, structure, interactions, pathways, expression, variants, drug interactions, and literature. Features collision-aware searches, evidence grading (T1-T4), explicit Open Targets coverage, and mandatory completeness auditing. Use when users ask about drug targets, proteins, genes, or need target v

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tpd-ternary-complex-agent

1

AI-powered ternary complex prediction for targeted protein degradation, modeling POI-degrader-E3 ligase assemblies to optimize PROTAC and molecular glue efficacy.

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tumor-mutational-burden-agent

1

Calculates and harmonizes Tumor Mutational Burden (TMB) across platforms to predict immunotherapy response.

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universal-single-cell-annotator

1

Annotate scRNA-seq

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venue-templates

1

Access comprehensive LaTeX templates, formatting requirements, and submission guidelines for major scientific publication venues (Nature, Science, PLOS, IEEE, ACM), academic conferences (NeurIPS, ICML, CVPR, CHI), research posters, and grant proposals (NSF, NIH, DOE, DARPA). This skill should be used when preparing manuscripts for journal submission, conference papers, research posters, or grant p

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virtual-lab-agent

1

AI-powered virtual laboratory orchestrating multi-agent scientific research teams for autonomous hypothesis generation, experimental design, and validation in biomedical research.

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web-archiving

1

Web page archiving and retrieval from cached/deleted sources. Use when accessing unavailable pages, preserving web content, creating legal evidence archives, or building redundant archival workflows. Covers Wayback Machine, Archive.today, ArchiveBox, and evidence preservation tools.

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web-scraping

1

Web scraping with anti-bot bypass, content extraction, undocumented APIs and poison pill detection. Use when extracting content from websites, handling paywalls, implementing scraping cascades or processing social media. Covers requests, trafilatura, Playwright with stealth mode, yt-dlp and instaloader patterns.

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