Explorar skills

Execute CUT&RUN processing pipeline from FASTQ to peaks and signal tracks. Child of pipeline-guide. Provides Nextflow execution with Docker and cloud deployment. Use when processing CUT&RUN or CUT&Tag data, an alternative to ChIP-seq with lower background. Trigger on: CUT&RUN pipeline, CUT&Tag, SEACR, Henikoff, targeted chromatin, pA-MNase, process CUT&RUN.

Deploy and manage Netlify projects using Next.js with serverless functions, environment variables, and continuous deployment. Use this skill when working with Netlify deployments, configuring netlify.toml, managing Netlify Functions, debugging webhooks, setting environment variables, or troubleshooting deployment issues for Next.js applications on Netlify. Essential for Twilio-Aldea and similar se

Audits websites for AI search visibility (GEO/SEO) and generates deployable artifacts (llms.txt, schema JSON-LD, robots.txt). 7-dimension scorecard tailored by site type and size, grounded in Princeton KDD 2024, Toronto 2025, and ICLR 2026 research. This skill should be used when optimizing for ChatGPT, Perplexity, Google AI Overviews, or other AI search engines. Also triggered by queries about AI

Execute ENCODE RNA-seq pipeline from FASTQ to gene quantification and signal tracks. Child of pipeline-guide. Provides Nextflow execution with Docker and cloud deployment. Use when processing RNA-seq data with STAR alignment, RSEM/Kallisto quantification, or generating expression matrices. Trigger on: RNA-seq pipeline, gene expression, STAR alignment, RSEM quantification, transcript quantification

Use this skill when working with Twilio communication APIs for SMS/MMS messaging, voice calls, phone number management, TwiML, webhook integration, two-way SMS conversations, bulk sending, or production deployment of telephony features. Includes official Twilio patterns, production code examples from Twilio-Aldea (provider-agnostic webhooks, signature validation, TwiML responses), and comprehensiv

Use this skill when working with Telnyx communication APIs for SMS/MMS messaging, voice calls, phone number management, messaging profiles, webhook integration, two-way SMS conversations, bulk sending, message scheduling, or production deployment of telephony features. v2.0 includes official Telnyx documentation, production patterns from Twilio-Aldea (Ed25519 signature validation, provider-agnosti

Battle-tested skills and hooks for Claude/Codex/Gemini/Pi.

Execute ENCODE Whole Genome Bisulfite Sequencing (WGBS) pipeline from FASTQ to methylation calls. Child of pipeline-guide. Provides Nextflow execution with Docker and cloud deployment. Use when processing WGBS/bisulfite-seq data, calling methylation levels, generating bedMethyl files. Trigger on: WGBS pipeline, bisulfite sequencing, methylation calling, DNA methylation pipeline, bismark, bwa-meth,

Execute ENCODE ATAC-seq processing pipeline from FASTQ to peaks and signal tracks. Child of pipeline-guide. Provides stage-by-stage Nextflow execution with Docker containers and cloud deployment. Handles Tn5 transposase offset correction, mitochondrial read removal, nucleosome-free fragment selection, and TSS enrichment scoring. Use when users need to process ATAC-seq data following ENCODE standar

Execute ENCODE DNase-seq pipeline from FASTQ to hotspots and footprints. Child of pipeline-guide. Provides Nextflow execution with Docker and cloud deployment. Use when processing DNase-seq data, calling DNase hypersensitive sites, performing footprinting analysis. Trigger on: DNase-seq pipeline, DNase hypersensitive, DHS, Hotspot2, footprinting, DNase I, chromatin accessibility DNase.

Execute ENCODE RNA-seq pipeline from FASTQ to gene quantification and signal tracks. Child of pipeline-guide. Provides Nextflow execution with Docker and cloud deployment. Use when processing RNA-seq data with STAR alignment, RSEM/Kallisto quantification, or generating expression matrices. Trigger on: RNA-seq pipeline, gene expression, STAR alignment, RSEM quantification, transcript quantification

Execute ENCODE ATAC-seq processing pipeline from FASTQ to peaks and signal tracks. Child of pipeline-guide. Provides stage-by-stage Nextflow execution with Docker containers and cloud deployment. Handles Tn5 transposase offset correction, mitochondrial read removal, nucleosome-free fragment selection, and TSS enrichment scoring. Use when users need to process ATAC-seq data following ENCODE standar