Explorar skills

Track exact provenance for every operation on ENCODE data — tool versions, reference files, scripts, parameters, and timestamps — to enable publication-ready methods writing. Use when the user processes ENCODE files, runs any bioinformatics tool, creates filtered/merged datasets, runs pipelines, performs liftover, uses R/Python/Bash for analysis, or needs to document their analysis chain for repro

Guide for integrating NHGRI-EBI GWAS Catalog associations with ENCODE regulatory data. Use when users need to find GWAS variants in ENCODE peaks, connect regulatory elements to disease associations, or prioritize functional variants using ENCODE annotations. Trigger on: GWAS, genome-wide association, SNP association, trait association, GWAS Catalog, disease association, risk variant, lead SNP, LD

Web terminal server: manage the wterm-server daemon for browser-based shell access (local or remote via Tailscale). This skill should be used when checking wterm status, listing or creating terminal sessions, killing sessions, or managing the wterm LaunchAgent. Trigger on: wterm, web terminal, remote terminal, remote shell, browser terminal, terminal sessions.

Build comprehensive ARCHITECTURE.md files following matklad's canonical guidelines — bird's-eye views, ASCII/Mermaid diagrams, codemaps, invariants, and layer boundaries. Triggers on document the architecture, create ARCHITECTURE.md, map this codebase, architectural overview.

Use to analyze correction trends, surface recurring patterns, and graduate repeat corrections to guardrails or anti-patterns.

Investigate datasets and resolve entities using OpenPlanter methodology — cross-reference heterogeneous sources, build Admiralty/ACH confidence-tiered evidence chains, and apply OSINT tradecraft. Triggers on entity resolution, cross-reference datasets, evidence chain, OSINT investigation, structured investigation.

Audits websites for AI search visibility (GEO/SEO) and generates deployable artifacts (llms.txt, schema JSON-LD, robots.txt). 7-dimension scorecard tailored by site type and size, grounded in Princeton KDD 2024, Toronto 2025, and ICLR 2026 research. This skill should be used when optimizing for ChatGPT, Perplexity, Google AI Overviews, or other AI search engines. Also triggered by queries about AI

Build distinctive, production-grade frontend interfaces — websites, landing pages, dashboards, React components, HTML/CSS layouts, editorial heroes with depth-parallax (Astryx pattern), pointer-reactive fluid effects. Avoids generic AI aesthetics. Triggers on web UI, styling, beautify, frontend design, dashboard, landing page, React component, editorial hero.

Strip AI writing patterns from prose across five registers — casual, professional, academic, technical, and narrative. Applies 200+ pattern rules to eliminate predictable LLM tells. Triggers on clean up writing, remove AI slop, edit prose, make this sound less AI.

Generate publication-ready methods sections, figure legends, supplementary tables, and data availability statements from ENCODE analysis provenance. Implements the scientific documentation standards requiring complete metadata reporting. Use when the user needs to write methods, generate figure legends, create supplementary tables, draft data availability statements, compile tool citations, or aut

Compliant fixture: acknowledges wrapping convention.

Cross-reference ENCODE data with PubMed, bioRxiv, ClinicalTrials.gov, Open Targets, GTEx, ClinVar, GWAS Catalog, gnomAD, Ensembl, and other scientific databases. Use when the user wants to find publications, preprints, or clinical trials related to ENCODE experiments, chain ENCODE data with other scientific MCP servers, or build translational pipelines from genomic data to clinical application.