Explorar skills

Execute ENCODE RNA-seq pipeline from FASTQ to gene quantification and signal tracks. Child of pipeline-guide. Provides Nextflow execution with Docker and cloud deployment. Use when processing RNA-seq data with STAR alignment, RSEM/Kallisto quantification, or generating expression matrices. Trigger on: RNA-seq pipeline, gene expression, STAR alignment, RSEM quantification, transcript quantification

Use to evaluate whether current work aligns with Better Value Sooner Safer Happier. Run at diamond completion and periodically.

Test fixture skill that writes to canvas AND carries the Preflight block. Check 31 must pass.

Parallel agent orchestration for OST exploration. Fan-out multiple solution explorations, fan-in results to compare and select winners.

Support-only Playwright runtime/reference for browser-automation — dev-server detection, a Node.js script runner, quiet screenshot helpers, SPA readiness helpers, and custom HTTP headers. Use when browser-automation selects the bundled Playwright fallback; do not route user intent here directly.

Use when reviewing storyboard outputs at any production stage (beat breakdown, beat board, sequence board, motion prompts), providing quality assurance feedback, or identifying revision requirements for Director agent

Use ENCODE functional genomics data for disease mechanism research. Use when the user wants to connect GWAS variants to regulatory elements, annotate disease-associated loci with functional data, identify therapeutic targets from epigenomic data, build disease regulatory models, cross-reference with clinical trials and drug databases, or conduct any disease-focused, pathology-driven, or clinical v

Evaluate design from a UX perspective with Nielsen's heuristics scoring, anti-pattern detection, persona-based testing, and actionable feedback. Report-only. Triggers on critique, UX review, design feedback, how does this look, evaluate the design, component review.

Discover, message, and coordinate AI coding agents (Claude Code, Codex CLI) running on the same machine via a shared Unix socket broker backed by SQLite. Supports cross-session task delegation, peer summaries, and session lifecycle management. Triggers on 'peer agents', 'cross-session communication', 'message Codex', 'inter-agent messaging', 'coordinate agents'.

Edit images with precision using ImageMagick 7, sips, transparent-background, and Pillow — with intelligent routing to AI semantic editing (Gemini/nano-banana-pro) for content-aware operations. Covers cropping, resizing, compositing, annotating, format conversion, color adjustment, background removal, batch processing, and montage creation. Triggers on image editing, crop, resize, composite, annot

Inverted orchestration—Codex CLI acts as CTO (planning and reviewing), Claude Code executes with native tools. Use when a task benefits from external architectural oversight before and after implementation.

Cross-reference ENCODE data with PubMed, bioRxiv, ClinicalTrials.gov, Open Targets, GTEx, ClinVar, GWAS Catalog, gnomAD, Ensembl, and other scientific databases. Use when the user wants to find publications, preprints, or clinical trials related to ENCODE experiments, chain ENCODE data with other scientific MCP servers, or build translational pipelines from genomic data to clinical application.