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69.576 skills encontradas
wp-block-theme-converter
Converte projetos HTML/CSS/JavaScript em Temas de Bloco WordPress (Edição Completa do Site) prontos para produção, utilizando a API de Interatividade, Block Bindings, CSS por bloco e as melhores práticas do WordPress 6.5+. Esta skill é usada para transformar HTML/CSS/JS estático em um tema de bloco WordPress, tema FSE ou tema compatível com Gutenberg.
pipeline-hic
Execute ENCODE Hi-C pipeline from FASTQ to contact matrices and loop calls. Child of pipeline-guide. Provides Nextflow execution with Docker and cloud deployment. Use when processing Hi-C data, generating contact matrices, calling loops or TADs. Trigger on: Hi-C pipeline, chromatin conformation, contact matrix, loop calling, TAD detection, Juicer, HiCCUPS, 3D genome.
slack
Slack workspace integration: 9 on-demand scripts (post, read, delete, search, stream, react, upload, channels, users) + dual-token support + RTS API search + chat streaming + AI Block Kit + Session Bridge + Claudicle unified launcher (Claude Agent SDK, soul engine, three-tier memory).
integrative-analysis
Plan and execute integrative analysis combining multiple ENCODE experiments for cross-dataset or multi-omic workflows. Use when the user wants to combine experiments, perform cross-dataset comparison, multi-omic integration, peak overlap analysis, differential binding, signal correlation, chromatin state segmentation, enhancer-gene linkage, or any analysis that requires merging or comparing data f
ensembl-annotation
Query the Ensembl REST API for regulatory feature annotations, variant effect prediction (VEP), coordinate liftover, gene lookups, and cross-references. Use when the user needs to annotate variants with VEP (consequence, CADD, REVEL, SpliceAI), check Ensembl Regulatory Build overlap for ENCODE regions, convert coordinates between GRCh37 and GRCh38, resolve gene IDs (Ensembl ↔ symbol ↔ RefSeq), loo
mycelium
Product discovery to delivery for AI agents. 45+ skills, 12+ theory gates — the agent earns the right to code. Software, courses, AI tools, services.
anofox-forecast
Comprehensive reference for the Anofox Forecast DuckDB extension (v0.4.6). Use when working with ts_* or anofox_fcst_ts_* functions, time series forecasting in DuckDB, or the anofox_forecast extension. Provides API signatures, model selection, common workflows, and critical gotchas.
publication-trust
Assess the scientific integrity and trustworthiness of publications before relying on their findings. Use this skill whenever evaluating a paper for a workflow, citing a study, building an analysis on published methods, or when a user asks about the reliability of a study. Checks for formal retractions, corrections, expressions of concern, and — critically — informal contradictions where subsequen
documenting-code
Battle-tested skills and hooks for Claude/Codex/Gemini/Pi.
particle-swarm-sim
Generate 20,000+ particle swarm simulators in two modes: sandbox (complete Three.js host runtime with gesture controls, security validation, code injection pipeline) and sim (behavior function bodies that position/color particles via a sandboxed API). The AI writes ONLY a function body — the host handles rendering, input, and security. Triggers on particle swarm, swarm simulator, particle behavior
pipeline-cutandrun
Execute CUT&RUN processing pipeline from FASTQ to peaks and signal tracks. Child of pipeline-guide. Provides Nextflow execution with Docker and cloud deployment. Use when processing CUT&RUN or CUT&Tag data, an alternative to ChIP-seq with lower background. Trigger on: CUT&RUN pipeline, CUT&Tag, SEACR, Henikoff, targeted chromatin, pA-MNase, process CUT&RUN.
accessibility-aggregation
Build comprehensive chromatin accessibility maps by aggregating ATAC-seq and DNase-seq narrowPeak data across multiple ENCODE experiments, donors, and labs. Use when the user wants to answer "where is chromatin accessible in my tissue?" by combining peak calls into a union peak set. Handles cross-lab variation, ATAC vs DNase platform differences, and ENCODE blocklist filtering.