bg-szy

Scientific research and analysis skills

Find patterns, motifs, and subsequences in biological sequences using Biopython. Use when searching for transcription factor binding sites, regulatory elements, or any sequence pattern. For restriction enzyme analysis, use the restriction-analysis skill.

Build reproducible bioinformatics pipelines with Snakemake using rules, wildcards, and automatic dependency resolution. Use when creating Python-based workflows, automating multi-step analyses with make-like dependency tracking, or running pipelines on HPC clusters with SLURM.

Converte macros AT_DISPATCH do PyTorch para o formato AT_DISPATCH_V2 no código C++ do ATen. Use ao portar AT_DISPATCH_ALL_TYPES_AND*, AT_DISPATCH_FLOATING_TYPES* ou outras macros de dispatch para a nova API v2, em arquivos de kernel do ATen, kernels CUDA e implementações de operadores nativos.

Esta skill deve ser usada ao criar novos componentes estilizados ou adicionar novas classes CSS. Ela orienta a nomeação semântica, composição Tailwind, suporte a modo escuro e cobertura de testes, sendo acionada por frases como criar componente ou adicionar estilos.

Presentation creation, format conversion (ODP/PPTX/PDF), slide automation with LibreOffice Impress.

Orders and orients assembled contigs into chromosome-scale scaffolds from long-range linking data, inserting N-gap spacers (adds no sequence). Covers Hi-C/Omni-C scaffolding (YaHS, SALSA2, 3D-DNA/Juicer), Hi-C read-mapping prerequisites (map each end separately, no mate rescue, dedup, enzyme-aware), reading the contact map for misjoins/inversions/false-duplications, manual curation in Juicebox/Pre

Kotlin Coroutines and Flow patterns for Android and KMP — structured concurrency, Flow operators, StateFlow, error handling, and testing.

Quality control for pooled CRISPR screens. Covers library representation, read distribution, replicate correlation, and essential gene recovery. Use when assessing screen quality before hit calling or diagnosing poor screen performance.

Searches and explores Burp Suite project files (.burp) from the command line. Use when searching response headers or bodies with regex patterns, extracting security audit findings, dumping proxy history or site map data, or analyzing HTTP traffic captured in a Burp project.

Desenvolvimento moderno de JavaScript/TypeScript com o runtime Bun, cobrindo gerenciamento de pacotes, empacotamento, testes e migração do Node.js. Ideal para otimizar a velocidade de desenvolvimento JS/TS ou migrar do Node.js para o Bun.

Utilize para análise estática profunda de estruturas binárias, desmontagem de código ou descompilação de funções, empregando radare2 (r2) e Ghidra headless para enumeração de funções, referências cruzadas, descompilação e gráficos de fluxo de controle.