Dados e Análise
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lamindb
This skill should be used when working with LaminDB, an open-source data framework for biology that makes data queryable, traceable, reproducible, and FAIR. Use when managing biological datasets (scRNA-seq, spatial, flow cytometry, etc.), tracking computational workflows, curating and validating data with biological ontologies, building data lakehouses, or ensuring data lineage and reproducibility
okx-dex-bridge
Use this skill to bridge tokens, cross-chain swap/transfer, move assets between chains, get cross-chain quotes, compare bridge fees, find the cheapest/fastest route, build bridge calldata, check bridge status, track a cross-chain transaction, list supported chains or bridge protocols, or when the user mentions bridging ETH/USDC/tokens from one chain (Ethereum, BSC, Polygon, Arbitrum, Base, Optimis
bio-workflows-merip-pipeline
End-to-end MeRIP-seq analysis from FASTQ to m6A peaks and differential methylation. Use when analyzing epitranscriptomic m6A modifications from immunoprecipitation data.
bio-clinical-databases-hla-typing
Calls HLA class I and class II alleles at 2/4/6/8-field resolution from WGS/WES/RNA-seq/long-read data using OptiType, HLA-LA, T1K, Polysolver, HLA-HD, arcasHLA, StarPhase, or HIBAG imputation. Use when typing for HSCT, solid-organ transplant, neoantigen prediction, PGx screening (B*57:01, B*15:02, etc.), or disease-association studies, with reconciliation across tools and IPD-IMGT/HLA version mis
sragent
Query the Sequence Read Archive (SRA), retrieve scientific publications, and analyze genomics metadata using the SRAgent toolkit. Supports accession conversion (GSE→SRX→SRR), BigQuery metadata queries, manuscript downloads from multiple sources, and scRNA-seq technology identification. Use when working with SRA/GEO datasets, finding publications, or analyzing single-cell sequencing experiments.
azure-storage-file-share-ts
O SDK JavaScript/TypeScript do Azure File Share (@azure/storage-file-share) permite operações de compartilhamento de arquivos SMB, como criar compartilhamentos, gerenciar diretórios, fazer upload/download de arquivos e manipular metadados, suportando cenários de protocolo SMB do Azure Files.
bio-multi-omics-similarity-network
Similarity Network Fusion (SNF) for patient stratification using multi-omics data. Integrates multiple data types into a unified patient similarity network. Use when performing patient stratification or integrating multi-omics data into unified similarity networks.
trading-audit-dashboard
Cria um painel profissional de auditoria forense de negociações a partir do histórico de qualquer corretora. Processa extratos de negociação, CSVs, PDFs ou qualquer arquivo de histórico de trades de plataformas como Trading 212, Interactive Brokers, eToro, Binance, MetaTrader e Robinhood.
pydantic-models-py
Create Pydantic models following the multi-model pattern with Base, Create, Update, Response, and InDB variants. Use when defining API request/response schemas, database models, or data validation in Python applications using Pydantic v2.
reactome-database
Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interactions, expression analysis, for systems biology studies.
bio-vcf-manipulation
Merge, concatenate, sort, intersect, and subset VCF files using bcftools. Use when combining variant files, comparing call sets, or restructuring VCF data.
client-health-dashboard
Generates a comprehensive client health overview across all accounts. Reads CRM data, support tickets, usage metrics, billing, and engagement logs. Calculates health scores, trend direction, and RAG status per client. Outputs a sorted risk report with recommended actions.