DevOps e Infra
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bio-virtual-screening
Performs structure-based virtual screening using AutoDock Vina, SMINA, GNINA (CNN scoring), and DiffDock-L hybrid workflows with explicit choice rules across rigid vs flexible docking, cross-docking vs self-docking, binding-site detection (P2Rank, fpocket), receptor preparation (PDB2PQR, PROPKA), ligand preparation (meeko, OpenBabel), and ultralarge-library screening (ZINC22, Enamine REAL). Use wh
deliberation:gathered
Use when user has a stake or perspective in a decision and wants to participate in discernment rather than receive advice - facilitates user alongside agent voices with participatory discipline teaching
bio-workflow-management-wdl-workflows
Create portable bioinformatics pipelines with Workflow Description Language (WDL) using Cromwell or miniwdl execution engines. Use when running GATK best practices pipelines, working with Terra/AnVIL platforms, or building workflows for cloud execution on Google Cloud or AWS.
memory-management
Padrões de rastreamento de contexto e registro de decisões para gerenciamento intencional de memória no Plugin Waypoint do Claude Code. Utilize para lembrar preferências do usuário, rastrear decisões, capturar contexto entre sessões, aprender com correções ou manter conhecimento específico do projeto, abordando persistência, limites, mecanismos de armazenamento e estratégias de atualização de memória.
elevenlabs-music-generation
Gere músicas completas e faixas instrumentais com qualidade de estúdio usando ElevenLabs Music no RunComfy. Ele transforma descrições de estilo e letras estruturadas em áudio estéreo, oferecendo controle por seção, vocais multilíngues e saída comercialmente amigável.
bio-epidemiological-genomics-pathogen-typing
Assigns isolate identity at the right resolution for the question -- ANI / Mash species triage, 7-locus MLST historical comparability, cgMLST / wgMLST outbreak resolution (chewBBACA, BIGSdb, Ridom SeqSphere, EnteroBase HierCC), in-silico serotyping (SISTR, SeqSero2 for Salmonella; SerotypeFinder for E. coli; Kaptive K/O for Klebsiella; SeroBA for pneumococcus; spa + SCCmec for S. aureus), and line
helm-chart-scaffolding
Design, organize, and manage Helm charts for templating and packaging Kubernetes applications with reusable configurations. Use when creating Helm charts, packaging Kubernetes applications, or implementing templated deployments.
clickup-integration-expert
Quando o usuário pergunta sobre sincronização com ClickUp ou sincronização de roadmaps com ClickUp.
get-available-resources
This skill should be used at the start of any computationally intensive scientific task to detect and report available system resources (CPU cores, GPUs, memory, disk space). It creates a JSON file with resource information and strategic recommendations that inform computational approach decisions such as whether to use parallel processing (joblib, multiprocessing), out-of-core computing (Dask, Za
aws-iam-best-practices
Revisão e fortalecimento de políticas IAM, e implementação do princípio do menor privilégio.
devops-tooling
Git operations, shell scripting, CI/CD pipelines, and terminal automation. Use for conventional commits, PowerShell/Bash scripting, configuring GitHub Actions, or automating development tooling workflows.
commit-author
Generate concise Conventional Commits messages from a staged diff. Enforces full type set, imperative subject lines, no AI co-author attribution. Use when user wants to commit, asks for a commit message, mentions "commit", or invokes /commit.