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Build reproducible bioinformatics pipelines with Snakemake using rules, wildcards, and automatic dependency resolution. Use when creating Python-based workflows, automating multi-step analyses with make-like dependency tracking, or running pipelines on HPC clusters with SLURM.

API key for MaxHub data APIs. Get one at https://www.aconfig.cn

Domine a documentação de API com OpenAPI 3.1 e ferramentas impulsionadas por IA.

Use when the user asks to run Codex CLI (codex exec, codex resume) or references OpenAI Codex for code analysis, refactoring, or automated editing. Uses GPT-5.5 by default for state-of-the-art software engineering.

Toolkit for styling artifacts with a theme. These artifacts can be slides, docs, reportings, HTML landing pages, etc. There are 10 pre-set themes with colors/fonts that you can apply to any artifact that has been creating, or can generate a new theme on-the-fly.

Build automated AI workflows combining multiple models and services. Patterns: batch processing, scheduled tasks, event-driven pipelines, agent loops. Tools: inference.sh CLI, bash scripting, Python SDK, webhook integration. Use for: content automation, data processing, monitoring, scheduled generation. Triggers: ai automation, workflow automation, batch processing, ai pipeline, automated content,

GSEA and over-representation analysis (ORA) for RNA-seq and proteomics. Wraps Enrichr for ORA against MSigDB, KEGG, GO, and 200+ databases; runs preranked GSEA on ranked DE gene lists. Outputs enrichment tables and running-score plots. Use after DESeq2 or edgeR for pathway-level interpretation.

Project gene annotations across genomes using TOGA (Kirilenko 2023 whole-genome-alignment chain-based projection with intactness classification), CESAR 2.0 (Sharma & Hiller 2017 codon-aware exon projection), LiftOff (Shumate & Salzberg 2020 reference-based annotation transfer), Liftover (UCSC), GeMoMa (Keilwagen 2019 evidence-based projection), and Comparative Annotation Toolkit (CAT). Use when tr

Manage upstream issue tracking for this project. Use when the user wants to log a bug or friction point in a vendor package or npm dependency, review open upstream items, resolve a tracked issue, run a trend review, generate the upstream observations section of a sprint retrospective, promote upstream observations to Basic Memory, discover known friction from other projects, or track a contributio

Context handoff for fresh sessions. Saves unsaved session knowledge to notebook, then produces a short orientation block to paste into a new chat. Use when user says '/memento', 'hand off context', 'prepare for fresh chat', 'save and brief', or before clearing context. NOT for: recovering context (use /notebook recover) or saving a single note.

CRM-lite for managing GEO agency prospects and clients. Track leads through the full sales pipeline: Lead → Qualified → Proposal Sent → Won → Lost. Store audit history, notes, deal values, and generate pipeline summaries. Use when user says "prospect", "lead", "client", "pipeline", "crm", "nuovo prospect", "aggiungi cliente", or when managing the business side of GEO services.

Consulte o CELLxGENE Census (mais de 61 milhões de células) programaticamente para obter dados de expressão em tecidos, doenças ou tipos de células do maior atlas de célula única curado. É ideal para consultas em escala populacional e comparações de atlas de referência.