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bio-chipseq-allele-specific-binding
Detects allele-specific transcription factor or histone modification binding from heterozygous-variant ChIP-seq using WASP (reference-bias filter; mandatory upstream), RASQUAL (joint QTL + bias-corrected testing), BaalChIP (Bayesian beta-binomial with copy-number-aware overdispersion), and AlleleSeq (personalized diploid genome). Handles imprinted-locus awareness, X-inactivation artifacts, cancer
agent-browser
Browser automation for AI agents via inference.sh. Navigate web pages, interact with elements using @e refs, take screenshots, record video. Capabilities: web scraping, form filling, clicking, typing, drag-drop, file upload, JavaScript execution. Use for: web automation, data extraction, testing, agent browsing, research. Triggers: browser, web automation, scrape, navigate, click, fill form, scree
test-automator
Master AI-powered test automation with modern frameworks,
rust-testing
Rust testing patterns including unit tests, integration tests, async testing, property-based testing, mocking, and coverage. Follows TDD methodology.
webapp-testing
Toolkit for interacting with and testing local web applications using Playwright. Supports verifying frontend functionality, debugging UI behavior, capturing browser screenshots, and viewing browser logs.
security-audit
Comprehensive security auditing workflow covering web application testing, API security, penetration testing, vulnerability scanning, and security hardening.
bio-imaging-mass-cytometry-spatial-analysis
Spatial analysis of cell neighborhoods and interactions in IMC data. Covers neighbor graphs, spatial statistics, and interaction testing. Use when analyzing spatial relationships between cell types, testing for neighborhood enrichment, or identifying cell-cell interaction patterns in imaging mass cytometry data.
adversary
Adversarial pressure-test of a decision, plan, or piece of work. Articulates the case FOR the current approach, then spawns a subagent to steel-man the best alternative, returns a synthesis with mandatory verdict. Invoke ONLY via /adversary — do NOT trigger on 'what do you think' or 'any concerns'.
swarm-advanced
Advanced swarm orchestration patterns for research, development, testing, and complex distributed workflows
bio-epitranscriptomics-m6a-differential
Identifies differential m6A methylation between conditions from MeRIP-seq paired IP/input data using exomePeak2 with `bam_ip` + `bam_input` (control arm) and `bam_treated_ip` + `bam_treated_input` (treatment arm) for integrated GC-bias-aware differential calling (Liu 2022 *NAR Genom Bioinform* 4:lqac046), QNB beta-binomial test (Liu 2017 *BMC Bioinformatics* 18:387), MeTDiff HMM-based differential
test-driven-development
Enforce RED-GREEN-REFACTOR cycle. Use when implementing features, fixing bugs, or writing any production code.
fortify
"setup" = install testing infra only. "check" = audit gaps and report, don't write tests. "full" or omitted = setup + audit + write + run + verify.