bg-szy

Time-to-event modeling with scikit-survival: Cox PH (elastic net), Random Survival Forests, Boosting, SVMs for censored data. C-index, Brier, time-dependent AUC; Kaplan-Meier, Nelson-Aalen, competing risks. Pipeline/GridSearchCV compatible. Use statsmodels for frequentist, pymc for Bayesian, lifelines for parametric.

Comprehensive GitHub release orchestration with AI swarm coordination for automated versioning, testing, deployment, and rollback management. Coordinates release-manager, cicd-engineer, tester, and docs-writer agents through hierarchical topology to handle semantic versioning, changelog generation, release notes, deployment validation, and post-release monitoring. Supports multiple release strateg

Discovers, classifies, and masks repetitive elements and transposable elements with RepeatModeler2 (de novo family library), RepeatMasker (masking against a library), EDTA (plant/structural TEs), or EarlGrey (auto-curating wrapper), and quantifies TE expression from RNA-seq with TEtranscripts/SQuIRE. Covers de-novo-library-as-curation-project, soft-vs-hard masking, the domesticated-gene over-maski

Provides thorough code review guidance when users ask for code reviews, PR reviews, or feedback on their code. Activates when users mention reviewing code, checking for issues, or want feedback on implementations.

Deploying Expo apps to iOS App Store, Android Play Store, web hosting, and API routes

Build Sankey, alluvial, river, and CONSORT-style flow diagrams to visualize cohort transitions, cell-state changes, or pipeline filtering using ggalluvial, networkD3, plotly, and consort. Use when showing how entities move between categories across timepoints (cell states, drug response classes, patient flow through a trial) or filtering pipelines (variants filtered through QC stages).

Use when working on Nuxt 4+ projects - provides server routes, file-based routing, middleware patterns, Nuxt-specific composables, and configuration with latest docs. Covers h3 v1 helpers (validation, WebSocket, SSE) and nitropack v2 patterns. Updated for Nuxt 4.3+.

Comprehensive spreadsheet creation, editing, and analysis with support for formulas, formatting, data analysis, and visualization. When Claude needs to work with spreadsheets (.xlsx, .xlsm, .csv, .tsv, etc) for: (1) Creating new spreadsheets with formulas and formatting, (2) Reading or analyzing data, (3) Modify existing spreadsheets while preserving formulas, (4) Data analysis and visualization i

Perform multi-locus sequence typing (MLST), core genome MLST, and SNP-based strain typing for bacterial isolate characterization using mlst and chewBBACA. Use when identifying strain types, tracking outbreak clones, or characterizing bacterial isolates.

This skill should be used as a mandatory final sanity check before git commit, PR creation, or declaring work done. Triggers on "commit", "push", "PR", "pull request", "done", "finished", "complete", "ship", "deploy", "ready to merge". Catches security vulnerabilities, logic errors, and business rule bugs that slip through despite passing tests.

Guidelines for creating and modifying markdown files in WooCommerce. Use when writing documentation, README files, or any markdown content.

Create production-ready Kubernetes manifests for Deployments, Services, ConfigMaps, and Secrets following best practices and security standards. Use when generating Kubernetes YAML manifests, creating K8s resources, or implementing production-grade Kubernetes configurations.